Application of wavelet transform to the MS-based proteomics data preprocessing

Pan Du; Simon M. Lin; Warren A. Kibbe; Haihui Wang

doi:10.1109/BIBE.2007.4375634

Application of wavelet transform to the MS-based proteomics data preprocessing

Pan Du^*
, Simon M. Lin
, Warren A. Kibbe
, Haihui Wang

^*此作品的通讯作者

数学科学学院

Northwestern University

科研成果: 书/报告/会议事项章节 › 会议稿件 › 同行评审

7 引用（Scopus）

摘要

Mass Spectrometry (MS) has become one of the major detection technologies for high-throughput proteomics. The preprocessing of mass spectra is crucial for its subsequent analysis like biomarker discovery or protein identification. Wavelet transform is gradually becoming an important methodology in the MS data preprocessing. This paper reviews the application of wavelet transforms in quality control, smoothing and peak detection of MS data preprocessing. It also proposes an improved Discrete Wavelet Transform (DWT) smoothing algorithm, which utilizes the cross-level DWT coefficients information during smoothing. Most of the algorithms described in this paper are included or will be included in the Bioconductor MassSpecWavelet package.

源语言	英语
主期刊名	Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, BIBE
页	680-686
页数	7
DOI	https://doi.org/10.1109/BIBE.2007.4375634
出版状态	已出版 - 2007
活动	7th IEEE International Conference on Bioinformatics and Bioengineering, BIBE - Boston, MA, 美国期限: 14 1月 2007 → 17 1月 2007

出版系列

姓名	Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, BIBE

会议

会议	7th IEEE International Conference on Bioinformatics and Bioengineering, BIBE
国家/地区	美国
市	Boston, MA
时期	14/01/07 → 17/01/07

访问文件

10.1109/BIBE.2007.4375634

其它文件与链接

链接到 Scopus 的出版物

引用此

Du, P., Lin, S. M., Kibbe, W. A., & Wang, H. (2007). Application of wavelet transform to the MS-based proteomics data preprocessing. 在 Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, BIBE (页码 680-686). 文章 4375634 (Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, BIBE). https://doi.org/10.1109/BIBE.2007.4375634

@inproceedings{e68fcc4601dd4d25a62531dbdaaf66d2,

title = "Application of wavelet transform to the MS-based proteomics data preprocessing",

abstract = "Mass Spectrometry (MS) has become one of the major detection technologies for high-throughput proteomics. The preprocessing of mass spectra is crucial for its subsequent analysis like biomarker discovery or protein identification. Wavelet transform is gradually becoming an important methodology in the MS data preprocessing. This paper reviews the application of wavelet transforms in quality control, smoothing and peak detection of MS data preprocessing. It also proposes an improved Discrete Wavelet Transform (DWT) smoothing algorithm, which utilizes the cross-level DWT coefficients information during smoothing. Most of the algorithms described in this paper are included or will be included in the Bioconductor MassSpecWavelet package.",

keywords = "Bioconductor, Mass spectrum, Preprocessing, Proteomics, Smoothing, Wavelet transform",

author = "Pan Du and Lin, \{Simon M.\} and Kibbe, \{Warren A.\} and Haihui Wang",

year = "2007",

doi = "10.1109/BIBE.2007.4375634",

language = "英语",

isbn = "1424415098",

series = "Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, BIBE",

pages = "680--686",

booktitle = "Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, BIBE",

note = "7th IEEE International Conference on Bioinformatics and Bioengineering, BIBE ; Conference date: 14-01-2007 Through 17-01-2007",

}

Du, P, Lin, SM, Kibbe, WA & Wang, H 2007, Application of wavelet transform to the MS-based proteomics data preprocessing. 在 Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, BIBE., 4375634, Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, BIBE, 页码 680-686, 7th IEEE International Conference on Bioinformatics and Bioengineering, BIBE, Boston, MA, 美国, 14/01/07. https://doi.org/10.1109/BIBE.2007.4375634

Application of wavelet transform to the MS-based proteomics data preprocessing. / Du, Pan; Lin, Simon M.; Kibbe, Warren A. 等.
Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, BIBE. 2007. 页码 680-686 4375634 (Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, BIBE).

科研成果: 书/报告/会议事项章节 › 会议稿件 › 同行评审

TY - GEN

T1 - Application of wavelet transform to the MS-based proteomics data preprocessing

AU - Du, Pan

AU - Lin, Simon M.

AU - Kibbe, Warren A.

AU - Wang, Haihui

PY - 2007

Y1 - 2007

N2 - Mass Spectrometry (MS) has become one of the major detection technologies for high-throughput proteomics. The preprocessing of mass spectra is crucial for its subsequent analysis like biomarker discovery or protein identification. Wavelet transform is gradually becoming an important methodology in the MS data preprocessing. This paper reviews the application of wavelet transforms in quality control, smoothing and peak detection of MS data preprocessing. It also proposes an improved Discrete Wavelet Transform (DWT) smoothing algorithm, which utilizes the cross-level DWT coefficients information during smoothing. Most of the algorithms described in this paper are included or will be included in the Bioconductor MassSpecWavelet package.

AB - Mass Spectrometry (MS) has become one of the major detection technologies for high-throughput proteomics. The preprocessing of mass spectra is crucial for its subsequent analysis like biomarker discovery or protein identification. Wavelet transform is gradually becoming an important methodology in the MS data preprocessing. This paper reviews the application of wavelet transforms in quality control, smoothing and peak detection of MS data preprocessing. It also proposes an improved Discrete Wavelet Transform (DWT) smoothing algorithm, which utilizes the cross-level DWT coefficients information during smoothing. Most of the algorithms described in this paper are included or will be included in the Bioconductor MassSpecWavelet package.

KW - Bioconductor

KW - Mass spectrum

KW - Preprocessing

KW - Proteomics

KW - Smoothing

KW - Wavelet transform

UR - https://www.scopus.com/pages/publications/47649100775

U2 - 10.1109/BIBE.2007.4375634

DO - 10.1109/BIBE.2007.4375634

M3 - 会议稿件

AN - SCOPUS:47649100775

SN - 1424415098

SN - 9781424415090

T3 - Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, BIBE

SP - 680

EP - 686

BT - Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, BIBE

T2 - 7th IEEE International Conference on Bioinformatics and Bioengineering, BIBE

Y2 - 14 January 2007 through 17 January 2007

ER -

Du P, Lin SM, Kibbe WA, Wang H. Application of wavelet transform to the MS-based proteomics data preprocessing. 在 Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, BIBE. 2007. 页码 680-686. 4375634. (Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, BIBE). doi: 10.1109/BIBE.2007.4375634

Application of wavelet transform to the MS-based proteomics data preprocessing

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