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Subtle interplay of stochasticity and deterministic dynamics pervades an evolutionary plausible genetic circuit for Bacillus subtilis competence

  • Hongguang Xi
  • , Zhuoqin Yang
  • , Marc Turcotte*
  • *Corresponding author for this work
  • University of Texas at Arlington

Research output: Contribution to journalArticlepeer-review

Abstract

Here we study the interplay of stochastic and deterministic dynamics in an evolutionary plausible candidate core genetic circuit for Bacillus subtilis competence. We find that high noise would not necessarily be detrimental to the circuit's ability to deliver the phenotype, due to an unexpected built-in robustness that we further investigate. Also, we find that seemingly subtle deterministic dynamical features of the regulation, unstable and stable limit cycles, while in the presence of biochemical noise, would result in a distinctive new observable in the phenotype. We conduct mathematical analyses of the system's stability at the fixed points and derive some general model-independent consequences. We also show how imperfect time-scale separation in the system would result in observables detrimental to the phenotype, that nature could have harnessed for selection.

Original languageEnglish
Pages (from-to)148-163
Number of pages16
JournalMathematical Biosciences
Volume246
Issue number1
DOIs
StatePublished - Nov 2013

Keywords

  • Bacillus subtilis
  • Competence
  • Genetic circuit
  • Nonlinear dynamics
  • Stochasticity

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