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Histopathologic Cancer Detection by Dense-Attention Network with Incorporation of Prior Knowledge

  • Mingyuan Liu
  • , Yang Yu
  • , Qingcheng Liao
  • , Jicong Zhang*
  • *Corresponding author for this work
  • BUAA-CCMU Advanced Innovation Center for Big Data-based Precision Medicine
  • Beihang University

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Abstract

To identify the cancerous region in histology Whole-Slide Images (WSI), the common approach is to apply a patch-level classifier. Appending surrounding tissues could improve the accuracy of patch-wise classification and maintain consistency of WSI. However, the rule that surrounding tissues play a supporting role rather than a decisive one is difficult to be learned directly by a Convolutional Neural Networks (CNN). In this paper, we propose Dense-Attention Network (DAN) for cancerous patch classification, where the attention mechanism is further developed to incorporate prior knowledge about the surrounding tissue. Moreover, the effectiveness of Data Augmentation in Inference stage (DAI) is further validated. The proposed method is evaluated on the PatchCamelyon dataset, where images with tumor tissues in the center are labeled positive, and those in the outer regions do not influence the label. Compared with other competitive deep-learning methods the proposed method has achieved better performance in terms of AUC.

Original languageEnglish
Title of host publicationISBI 2020 - 2020 IEEE International Symposium on Biomedical Imaging
PublisherIEEE Computer Society
Pages466-470
Number of pages5
ISBN (Electronic)9781538693308
DOIs
StatePublished - Apr 2020
Event17th IEEE International Symposium on Biomedical Imaging, ISBI 2020 - Virtual, Online, United States
Duration: 3 Apr 2020 → 7 Apr 2020

Publication series

NameProceedings - International Symposium on Biomedical Imaging
Volume2020-April
ISSN (Print)1945-7928
ISSN (Electronic)1945-8452

Conference

Conference17th IEEE International Symposium on Biomedical Imaging, ISBI 2020
Country/TerritoryUnited States
CityVirtual, Online
Period3/04/20 → 7/04/20

UN SDGs

This output contributes to the following UN Sustainable Development Goals (SDGs)

  1. SDG 3 - Good Health and Well-being
    SDG 3 Good Health and Well-being

Keywords

  • Attention Mechanism
  • Cancer detection
  • DenseNet
  • Prior Knowledge Incorporation

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