Directed Adaptive Graphical Lasso for causality inference

  • Zhiquan Ren
  • , Yang Yang
  • , Feng Bao
  • , Yue Deng
  • , Qionghai Dai*
  • *Corresponding author for this work

Research output: Contribution to journalArticlepeer-review

Abstract

Graphical lasso provides a general solution to reveal the indirect statistic dependence of multiple variables in the high dimensional space. Rather than the undirected relationships, a number of practical problems concern much about the causality between nodes in terms of directed links. To address this challenge, in this letter, we propose Directed Adaptive Graphical Lasso (DAGL), a general framework for directed graph structure inference in the framework of sparse learning and graph theory. Both the experiments from simulation and cellular signaling system identification verify that DAGL could robustly predict the directed graph structure and accurately reveal the inherent causality between nodes.

Original languageEnglish
Pages (from-to)1989-1994
Number of pages6
JournalNeurocomputing
Volume173
DOIs
StatePublished - 15 Jan 2016
Externally publishedYes

Keywords

  • Biological signaling pathway
  • Causality inference
  • Graphical lasso
  • Sparse optimization

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