Are filter methods very effective in gene selection of microarray data?

Zhou Jun Li; Li Juan Zhang; Huo Wang Chen

doi:10.1109/BIBMW.2007.4425406

Are filter methods very effective in gene selection of microarray data?

Zhou Jun Li^*
, Li Juan Zhang
, Huo Wang Chen

^*Corresponding author for this work

School of Computer Science and Engineering

National University of Defense Technology

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

4 Scopus citations

Abstract

Feature (Gene) selection is a frequently used preprocessing technology for successful cancer classification task in microarray gene expression data analysis. Widely used gene selection approaches are mainly focused on the filter methods. Filter methods are usually considered to be very effective and efficient for high-dimensional data. This paper reviews the existing filter methods, and shows the performance of the representative algorithms on microarray data by extensive experimental study. Surprisingly, the experimental results show that filter methods are not very effective on microarray data. We analyze the cause of the result and provide the basic ideas for potential solutions.

Original language	English
Title of host publication	Proceedings - 2007 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW
Publisher	Institute of Electrical and Electronics Engineers Inc.
Pages	97-100
Number of pages	4
ISBN (Print)	9781424416042
DOIs	https://doi.org/10.1109/BIBMW.2007.4425406
State	Published - 2007
Event	2007 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW - San Jose, CA, United States Duration: 2 Nov 2007 → 4 Nov 2007

Publication series

Name	Proceedings - 2007 IEEE International Conference on Bioinformaticsand Biomedicine Workshops, BIBMW

Conference

Conference	2007 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW
Country/Territory	United States
City	San Jose, CA
Period	2/11/07 → 4/11/07

UN SDGs

This output contributes to the following UN Sustainable Development Goals (SDGs)

SDG 3 Good Health and Well-being

Access to Document

10.1109/BIBMW.2007.4425406

Cite this

Li, Z. J., Zhang, L. J., & Chen, H. W. (2007). Are filter methods very effective in gene selection of microarray data? In Proceedings - 2007 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW (pp. 97-100). Article 4425406 (Proceedings - 2007 IEEE International Conference on Bioinformaticsand Biomedicine Workshops, BIBMW). Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/BIBMW.2007.4425406

Li, Zhou Jun ; Zhang, Li Juan ; Chen, Huo Wang. / Are filter methods very effective in gene selection of microarray data?. Proceedings - 2007 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW. Institute of Electrical and Electronics Engineers Inc., 2007. pp. 97-100 (Proceedings - 2007 IEEE International Conference on Bioinformaticsand Biomedicine Workshops, BIBMW).

@inproceedings{ea0557f76f9a4f5eb69acec539b891f4,

title = "Are filter methods very effective in gene selection of microarray data?",

abstract = "Feature (Gene) selection is a frequently used preprocessing technology for successful cancer classification task in microarray gene expression data analysis. Widely used gene selection approaches are mainly focused on the filter methods. Filter methods are usually considered to be very effective and efficient for high-dimensional data. This paper reviews the existing filter methods, and shows the performance of the representative algorithms on microarray data by extensive experimental study. Surprisingly, the experimental results show that filter methods are not very effective on microarray data. We analyze the cause of the result and provide the basic ideas for potential solutions.",

author = "Li, \{Zhou Jun\} and Zhang, \{Li Juan\} and Chen, \{Huo Wang\}",

year = "2007",

doi = "10.1109/BIBMW.2007.4425406",

language = "英语",

isbn = "9781424416042",

series = "Proceedings - 2007 IEEE International Conference on Bioinformaticsand Biomedicine Workshops, BIBMW",

publisher = "Institute of Electrical and Electronics Engineers Inc.",

pages = "97--100",

booktitle = "Proceedings - 2007 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW",

address = "美国",

note = "2007 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW ; Conference date: 02-11-2007 Through 04-11-2007",

}

Li, ZJ, Zhang, LJ & Chen, HW 2007, Are filter methods very effective in gene selection of microarray data? in Proceedings - 2007 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW., 4425406, Proceedings - 2007 IEEE International Conference on Bioinformaticsand Biomedicine Workshops, BIBMW, Institute of Electrical and Electronics Engineers Inc., pp. 97-100, 2007 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW, San Jose, CA, United States, 2/11/07. https://doi.org/10.1109/BIBMW.2007.4425406

Are filter methods very effective in gene selection of microarray data? / Li, Zhou Jun; Zhang, Li Juan; Chen, Huo Wang.
Proceedings - 2007 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW. Institute of Electrical and Electronics Engineers Inc., 2007. p. 97-100 4425406 (Proceedings - 2007 IEEE International Conference on Bioinformaticsand Biomedicine Workshops, BIBMW).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review